TSS: Rfhg 24340.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=TTS (ENST00000360131.4) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D3101867,EH38E1982488) |chr=chr2 |cpg_percent=0.250000 |detailed_a...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |annotation=TTS (NM_021831) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3101867,EH38E1982488) | |ccre_description=pELS,CTCF-bound (EH38D3101867,EH38E1982488) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.250000 | |cpg_percent=0.250000 | ||
|detailed_annotation= | |detailed_annotation=TTS (NM_021831) | ||
|distance=-206 | |distance=-206 | ||
|distance_to_tss= | |distance_to_tss=237 | ||
|end=27071419 | |end=27071419 | ||
|entrez_id= | |entrez_id=100128731 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.800000 | |gc_percent=0.800000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=oligosaccharyltransferase complex subunit 4, non-catalytic | ||
|gene_id=100128731 | |gene_id=100128731 | ||
|gene_name= | |gene_name=OST4 | ||
|gene_source=HGNC:32483 | |gene_source=HGNC:32483 | ||
|gene_symbol=OST4 | |gene_symbol=OST4 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:32483 | |hgnc_mgi_id=HGNC:32483 | ||
|nearest_ensembl= | |methods=SLIC_CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000228474 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001134693 | ||
|nearest_unigene= | |nearest_refseq=NM_001134693 | ||
|nearest_unigene=Hs.502948 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=27071415 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 09:50, 8 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3101867,EH38E1982488) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 237 |
|---|---|
| Nearest PromoterID: | NM_001134693 |
| Entrez ID: | 100128731 |
| Nearest Unigene: | Hs.502948 |
| Nearest Refseq: | NM_001134693 |
| Nearest Ensembl: | ENSG00000228474 |
| Gene Name: | OST4 |
| Gene Alias: | - |
| Gene Description: | oligosaccharyltransferase complex subunit 4, non-catalytic |
| Gene Type: | protein-coding |
| CpG%: | 0.250000 |
| GC%: | 0.800000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.