TSS: Rfhg 24342.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000429985.1) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3101868,EH38E1982489) |chr=chr2 |cpg_percent=0.113402 |det...") |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001134693) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3101868,EH38E1982489) | |ccre_description=PLS,CTCF-bound (EH38D3101868,EH38E1982489) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.113402 | |cpg_percent=0.113402 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001134693) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-2 | ||
|end=27071705 | |end=27071705 | ||
|entrez_id= | |entrez_id=100128731 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.663265 | |gc_percent=0.663265 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=oligosaccharyltransferase complex subunit 4, non-catalytic | ||
|gene_id=100128731 | |gene_id=100128731 | ||
|gene_name= | |gene_name=OST4 | ||
|gene_source=HGNC:32483 | |gene_source=HGNC:32483 | ||
|gene_symbol=OST4 | |gene_symbol=OST4 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:32483 | |hgnc_mgi_id=HGNC:32483 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}RAMPAGE{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}TIF-seq2{{!}}STRIPE-seq{{!}}oligo_capping | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000228474 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001134693 | ||
|nearest_unigene= | |nearest_refseq=NM_001134693 | ||
|nearest_unigene=Hs.502948 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}RAMPAGE{{!}}PRJNA4843412{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJDB5282{{!}}DRA013844{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start= | |start=27071608 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000447619.5 ENST00000456793.2 ENST00000429985.1 BC105283 AL049447 | |transcript_name=ENST00000447619.5 ENST00000456793.2 ENST00000429985.1 BC105283 AL049447 | ||
|tss_cluster_detected=17 | |||
|tss_id=rfhg_24342.1 | |tss_id=rfhg_24342.1 | ||
|tss_id_v3=hg_27442.1 | |tss_id_v3=hg_27442.1 |
Latest revision as of 09:50, 8 December 2023
Basic information about the TSS
|
| |||||||||||||||
Source datasets | FANTOM5|EPD|DBTSS|DRA000914|ENCODE|RAMPAGE|PRJNA4843412 |PRJNA548673|PRJNA615891|PRJNA401781|PRJDB5282|DRA013844 |PRJNA597322 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | CAGE|TSS_database|TSS-seq|RAMPAGE|NETCAGE|ReCappable-seq |SLIC_CAGE|C1CAGE|TIF-seq2|STRIPE-seq|oligo_capping | |||||||||||||||
TSS cluster detected* | 17 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D3101868,EH38E1982489) |
---|---|
Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -2 |
---|---|
Nearest PromoterID: | NM_001134693 |
Entrez ID: | 100128731 |
Nearest Unigene: | Hs.502948 |
Nearest Refseq: | NM_001134693 |
Nearest Ensembl: | ENSG00000228474 |
Gene Name: | OST4 |
Gene Alias: | - |
Gene Description: | oligosaccharyltransferase complex subunit 4, non-catalytic |
Gene Type: | protein-coding |
CpG%: | 0.113402 |
GC%: | 0.663265 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.