TSS: Rfhg 25036.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000452582.5:0 ENST00000414013.5:0 ENST00000430665.5:0 ENST00000422413.1:0 ENST00000342166.10:0 ENST00000295066.3:0 NM_001321210.2:0 NM_032574.4:0 NM_001321209.2:0 NR_135585.2:0 AK295755:0 BC015970:0 AF226998:0 NR_135587.1:-3 KJ899820:296 | ||
|annotation=promoter-TSS (NR_135587) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3106525,EH38E1985800) | |ccre_description=PLS,CTCF-bound (EH38D3106525,EH38E1985800) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.101266 | |cpg_percent=0.101266 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_135587) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=13 | ||
|end=32039832 | |end=32039832 | ||
|entrez_id= | |entrez_id=84661 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.662500 | |gc_percent=0.662500 | ||
|gene_alias= | |gene_alias=Cps25{{!}}HDPY-30{{!}}Saf19 | ||
|gene_description= | |gene_description=dpy-30 histone methyltransferase complex regulatory subunit | ||
|gene_id=84661 | |gene_id=84661 | ||
|gene_name=dpy-30 histone methyltransferase complex regulatory subunit | |gene_name=dpy-30 histone methyltransferase complex regulatory subunit | ||
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|gene_symbol=DPY30 | |gene_symbol=DPY30 | ||
|gene_synonyms=Cps25 HDPY-30 Saf19 | |gene_synonyms=Cps25 HDPY-30 Saf19 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24590 | |hgnc_mgi_id=HGNC:24590 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}TIF-seq2{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}NETCAGE{{!}}STRIPE-seq{{!}}C1CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000162961 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001321209 | ||
|nearest_unigene= | |nearest_refseq=NM_032574 | ||
|nearest_transcripts=NR_135587.1:-3 KJ899820:296 | |||
|nearest_unigene=Hs.531788 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=32039753 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000452582.5 ENST00000414013.5 ENST00000430665.5 ENST00000422413.1 ENST00000342166.10 ENST00000295066.3 BC015970 AF226998 | |transcript_name=ENST00000452582.5 ENST00000414013.5 ENST00000430665.5 ENST00000422413.1 ENST00000342166.10 ENST00000295066.3 BC015970 AF226998 | ||
|tss_cluster_detected=14 | |||
|tss_id=rfhg_25036.1 | |tss_id=rfhg_25036.1 | ||
|tss_id_v3=hg_27707.1 | |tss_id_v3=hg_27707.1 | ||
Latest revision as of 07:22, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914|PRJNA615891|PRJNA401781|PRJNA548673 |PRJNA4843412|DRA013844|PRJNA597322|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|TIF-seq2|oligo_capping|ReCappable-seq |SLIC_CAGE|RAMPAGE|NETCAGE|STRIPE-seq|C1CAGE | |||||||||||||||
| TSS cluster detected* | 14 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3106525,EH38E1985800) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001321209 |
| Entrez ID: | 84661 |
| Nearest Unigene: | Hs.531788 |
| Nearest Refseq: | NM_032574 |
| Nearest Ensembl: | ENSG00000162961 |
| Gene Name: | dpy-30 histone methyltransferase complex regulatory subunit |
| Gene Alias: | Cps25|HDPY-30|Saf19 |
| Gene Type: | protein-coding |
| CpG%: | 0.101266 |
| GC%: | 0.662500 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.