TSS: Rfhg 27782.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NM_001320698.2:-16 | ||
|annotation=promoter-TSS (NM_014911) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3137674,EH38E2007378) | |ccre_description=PLS,CTCF-bound (EH38D3137674,EH38E2007378) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.152174 | |cpg_percent=0.152174 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_014911) | ||
|distance=-16 | |distance=-16 | ||
|distance_to_tss= | |distance_to_tss=39 | ||
|end=69643870 | |end=69643870 | ||
|entrez_id= | |entrez_id=307 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.787234 | |gc_percent=0.787234 | ||
|gene_alias= | |gene_alias=ANX4{{!}}HEL-S-274{{!}}P32.5{{!}}PAP-II{{!}}PIG28{{!}}PP4-X{{!}}ZAP36 | ||
|gene_description= | |gene_description=annexin A4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000196975 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001320698 | ||
|nearest_unigene= | |nearest_refseq=NM_001153 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.422986 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=69643824 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 08:12, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3137674,EH38E2007378) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_001320698 |
| Entrez ID: | 307 |
| Nearest Unigene: | Hs.422986 |
| Nearest Refseq: | NM_001153 |
| Nearest Ensembl: | ENSG00000196975 |
| Gene Name: | |
| Gene Alias: | ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 |
| Gene Type: | protein-coding |
| CpG%: | 0.152174 |
| GC%: | 0.787234 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |