TSS: Rfhg 28354.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000295326.4)
|all_trans=BC007916:18 BC015635:18 ENST00000656407.1:-55 BC008757:-76 ENST00000533563.2:-89 AK123453:-89 ENST00000423477.2:-95 BC030102:-108 ENST00000529783.1:-125 ENST00000655044.1:-127 NR_045637.1:-153 NR_045636.1:-153 NR_045634.1:-153
|annotation=promoter-TSS (NM_001035505)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3141801,EH38E2010210)
|ccre_description=PLS,CTCF-bound (EH38D3141801,EH38E2010210)
|chr=chr2
|chr=chr2
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000295326.4)
|detailed_annotation=promoter-TSS (NM_001035505)
|distance=18
|distance=18
|distance_to_tss=94
|distance_to_tss=158
|end=74148145
|end=74148145
|entrez_id=ENSG00000225439
|entrez_id=100507171
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=BOLA3 divergent transcript
|gene_id=100507171
|gene_id=100507171
|gene_name=BOLA3 divergent transcript
|gene_name=BOLA3 divergent transcript
Line 19: Line 20:
|gene_symbol=BOLA3-DT
|gene_symbol=BOLA3-DT
|gene_synonyms=
|gene_synonyms=
|gene_type=antisense
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:42922
|hgnc_mgi_id=HGNC:42922
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000533563.1
|nearest_ensembl=ENSG00000225439
|nearest_refseq=
|nearest_promoter_id=NR_045636
|nearest_unigene=ENST00000533563
|nearest_refseq=NR_045634
|nearest_transcripts=ENST00000656407.1:-55 BC008757:-76 ENST00000533563.2:-89 AK123453:-89 ENST00000423477.2:-95 BC030102:-108 ENST00000529783.1:-125 ENST00000655044.1:-127 NR_045637.1:-153 NR_045636.1:-153 NR_045634.1:-153
|nearest_unigene=Hs.503348
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=74148133
|start=74148134
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 08:23, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_28354.1
Species:human
Chr:chr2
Start:74148134
End:74148145
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3141801,EH38E2010210)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:BC007916:18
BC015635:18
GeneID:100507171
HGNC/MGI_ID:HGNC:42922
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000656407.1:-55
  • BC008757:-76
  • ENST00000533563.2:-89
  • AK123453:-89
  • ENST00000423477.2:-95
  • BC030102:-108
  • ENST00000529783.1:-125
  • ENST00000655044.1:-127
  • NR_045637.1:-153
  • NR_045636.1:-153
  • NR_045634.1:-153
view more...
Gene_name:BOLA3 divergent transcript
Gene_symbol:BOLA3-DT
Gene_synonyms:
Gene_source:HGNC:42922



TATA-Box annotation

Distance to TSS:158
Nearest PromoterID:NR_045636
Entrez ID:100507171
Nearest Unigene:Hs.503348
Nearest Refseq:NR_045634
Nearest Ensembl:ENSG00000225439
Gene Name:BOLA3 divergent transcript
Gene Alias:-
Gene Type:ncRNA
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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