TSS: Rfhg 3070.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000635097.1)
|all_trans=ENST00000455966.2:-188 NR_110692.1:-188 BC039533:-188 ENST00000655353.1:354 ENST00000667783.1:363 ENST00000635097.2:365 ENST00000657670.1:369 ENST00000655655.1:384
|annotation=intron (NR_109760, intron 1 of 1)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS,CTCF-bound (EH38D2137195,EH38E1326685)
|ccre_description=pELS,CTCF-bound (EH38D2137195,EH38E1326685)
|chr=chr1
|chr=chr1
|cpg_percent=0.071429
|cpg_percent=0.071429
|detailed_annotation=protein_coding-intron (ENST00000648594.1, intron 1 of 5)
|detailed_annotation=intron (NR_109760, intron 1 of 1)
|distance=-188
|distance=-188
|distance_to_tss=195
|distance_to_tss=195
|end=22025860
|end=22025860
|entrez_id=ENSG00000228397
|entrez_id=101928043
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.600000
|gc_percent=0.600000
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=long intergenic non-protein coding RNA 1635
|gene_id=101928043
|gene_id=101928043
|gene_name=long intergenic non-protein coding RNA 1635
|gene_name=long intergenic non-protein coding RNA 1635
Line 19: Line 20:
|gene_symbol=LINC01635
|gene_symbol=LINC01635
|gene_synonyms=
|gene_synonyms=
|gene_type=lincRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:52422
|hgnc_mgi_id=HGNC:52422
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000455966.2
|nearest_ensembl=ENSG00000228397
|nearest_refseq=
|nearest_promoter_id=NR_110692
|nearest_unigene=ENST00000635097
|nearest_refseq=NR_110692
|nearest_transcripts=ENST00000655353.1:354 ENST00000667783.1:363 ENST00000635097.2:365 ENST00000657670.1:369 ENST00000655655.1:384
|nearest_unigene=Hs.617422
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=22025845
|start=22025846
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 09:06, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_3070.1
Species:human
Chr:chr1
Start:22025846
End:22025860
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D2137195,EH38E1326685)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000455966.2:-188
BC039533:-188
GeneID:101928043
HGNC/MGI_ID:HGNC:52422
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000655353.1:354
  • ENST00000667783.1:363
  • ENST00000635097.2:365
  • ENST00000657670.1:369
  • ENST00000655655.1:384
view more...
Gene_name:long intergenic non-protein coding RNA 1635
Gene_symbol:LINC01635
Gene_synonyms:
Gene_source:HGNC:52422



TATA-Box annotation

Distance to TSS:195
Nearest PromoterID:NR_110692
Entrez ID:101928043
Nearest Unigene:Hs.617422
Nearest Refseq:NR_110692
Nearest Ensembl:ENSG00000228397
Gene Name:long intergenic non-protein coding RNA 1635
Gene Alias:-
Gene Type:ncRNA
CpG%:0.071429
GC%:0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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