TSS: Rfmm 100971.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=NM_001081219.2:-26 AF009960:-26 ENSMUST00000079590.7:-112 BC147605:-112 BC147612:-112 | ||
|annotation=promoter-TSS (NM_001081219.2) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001081219.2) | ||
|distance=-26 | |distance=-26 | ||
|distance_to_tss= | |distance_to_tss=30 | ||
|end=127541160 | |end=127541160 | ||
|entrez_id= | |entrez_id=Myo1a | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Myo1a | |gene_symbol=Myo1a | ||
|gene_synonyms=BBM-I Myhl brush_border_myosin_1 | |gene_synonyms=BBM-I Myhl brush_border_myosin_1 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:107732 | |hgnc_mgi_id=MGI:107732 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001081219.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000079590.7:-112 BC147605:-112 BC147612:-112 | ||
|nearest_unigene=NM_001081219 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start= | |start=127541151 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 16:59, 18 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_001081219.2 |
| Entrez ID: | Myo1a |
| Nearest Unigene: | NM_001081219 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | myosin IA |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.