TSS: Rfmm 108733.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NR_015519.1, intron 2 of 3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D1246554,EM10E0512869) | |ccre_description=PLS,CTCF-bound (EM10D1246554,EM10E0512869) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.020408 | |cpg_percent=0.020408 | ||
|detailed_annotation= | |detailed_annotation=-intron (NR_015519.1, intron 2 of 3) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=866 | ||
|end=83115317 | |end=83115317 | ||
|entrez_id= | |entrez_id=AI662270 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.464646 | |gc_percent=0.464646 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100043636 | |gene_id=100043636 | ||
|gene_name= | |gene_name=AI662270 | ||
|gene_source=MGI:2144254 MGI:3651774 | |gene_source=MGI:2144254 MGI:3651774 | ||
|gene_symbol=AI662270 Gm11427 | |gene_symbol=AI662270 Gm11427 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2144254 MGI:3651774 | |hgnc_mgi_id=MGI:2144254 MGI:3651774 | ||
|methods=CAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_015519.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NR_015519 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=83115219 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000216233.2 ENSMUST00000214346.2 AK136560 AK079892 AK079857 | |transcript_name=ENSMUST00000216233.2 ENSMUST00000214346.2 AK136560 AK079892 AK079857 | ||
|tss_cluster_detected=2 | |||
|tss_id=rfmm_108733.1 | |tss_id=rfmm_108733.1 | ||
|tss_id_v3=mm_97880.1 | |tss_id_v3=mm_97880.1 | ||
Latest revision as of 22:39, 21 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|CAGE_and_CAGEscan | |||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D1246554,EM10E0512869) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 866 |
|---|---|
| Nearest PromoterID: | NR_015519.1 |
| Entrez ID: | AI662270 |
| Nearest Unigene: | NR_015519 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | AI662270 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.020408 |
| GC%: | 0.464646 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.