TSS: Rfmm 114396.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001363425.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2392253,EM10E0988668) | |ccre_description=PLS,CTCF-bound (EM10D2392253,EM10E0988668) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.184211 | |cpg_percent=0.184211 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001363425.1) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-57 | ||
|end=120472526 | |end=120472526 | ||
|entrez_id= | |entrez_id=Arhgdia | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.794872 | |gc_percent=0.794872 | ||
Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100042371 | |gene_id=100042371 | ||
|gene_name= | |gene_name=Arhgdia | ||
|gene_source=MGI:3781980 | |gene_source=MGI:3781980 | ||
|gene_symbol=Gm3807 | |gene_symbol=Gm3807 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3781980 | |hgnc_mgi_id=MGI:3781980 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_133796.8 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001363425 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=120472488 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Latest revision as of 00:14, 22 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | PLS,CTCF-bound (EM10D2392253,EM10E0988668) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -57 |
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Nearest PromoterID: | NM_133796.8 |
Entrez ID: | Arhgdia |
Nearest Unigene: | NM_001363425 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Arhgdia |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.184211 |
GC%: | 0.794872 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.