TSS: Rfmm 115440.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENSMUST00000177778.9:64 NM_001033157.4:64 NM_001201330.1:64 AK017753:64 ENSMUST00000063216.6:100 AK139861:100 BC150925:201 | ||
|annotation=promoter-TSS (NM_001033157.4) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D1284615,EM10E0532298) | |ccre_description=PLS,CTCF-bound (EM10D1284615,EM10E0532298) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.333333 | |cpg_percent=0.333333 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001033157.4) | ||
|distance=64 | |distance=64 | ||
|distance_to_tss= | |distance_to_tss=4 | ||
|end=18564447 | |end=18564447 | ||
|entrez_id= | |entrez_id=5730507C01Rik | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.750000 | |gc_percent=0.750000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=5730507C01Rik | |gene_symbol=5730507C01Rik | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1917882 | |hgnc_mgi_id=MGI:1917882 | ||
|methods=CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_011243861.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000063216.6:100 AK139861:100 BC150925:201 | ||
|nearest_unigene=XM_011243861 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=18564444 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 21:00, 18 March 2025
Basic information about the TSS
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| Source datasets | DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D1284615,EM10E0532298) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | XM_011243861.3 |
| Entrez ID: | 5730507C01Rik |
| Nearest Unigene: | XM_011243861 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | RIKEN cDNA 5730507C01 gene |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.333333 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.