TSS: Rfmm 116670.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001100110.2) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.076923 | |cpg_percent=0.076923 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001100110.2) | ||
|distance=17 | |distance=17 | ||
|distance_to_tss= | |distance_to_tss=40 | ||
|end=55277209 | |end=55277209 | ||
|entrez_id= | |entrez_id=Srp54c | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100101806 | |gene_id=100101806 | ||
|gene_name= | |gene_name=Srp54c | ||
|gene_source=MGI:3714359 | |gene_source=MGI:3714359 | ||
|gene_symbol=Srp54c | |gene_symbol=Srp54c | ||
|gene_synonyms=E330029E12Rik | |gene_synonyms=E330029E12Rik | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3714359 | |hgnc_mgi_id=MGI:3714359 | ||
|methods=CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001100110.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_011243971 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=55277196 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 00:51, 22 December 2023
Basic information about the TSS
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| Source datasets | DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 40 |
|---|---|
| Nearest PromoterID: | NM_001100110.2 |
| Entrez ID: | Srp54c |
| Nearest Unigene: | XM_011243971 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Srp54c |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.076923 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.