TSS: Rfmm 1301.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000171319.4) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EM10D2269265,EM10E0934695) |chr=chr1 |cpg_percent=0.000000 |...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001177348.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2269265,EM10E0934695) | |ccre_description=PLS,CTCF-bound (EM10D2269265,EM10E0934695) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001177348.1) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
|end=39844505 | |end=39844505 | ||
|entrez_id= | |entrez_id=Gm3646 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.411765 | |gc_percent=0.411765 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100042065 | |gene_id=100042065 | ||
|gene_name= | |gene_name=Gm3646 | ||
|gene_source=MGI:3781822 | |gene_source=MGI:3781822 | ||
|gene_symbol=Gm3646 | |gene_symbol=Gm3646 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3781822 | |hgnc_mgi_id=MGI:3781822 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001177348.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001177348 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start= | |start=39844472 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 04:27, 22 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2269265,EM10E0934695) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001177348.1 |
| Entrez ID: | Gm3646 |
| Nearest Unigene: | NM_001177348 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gm3646 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.411765 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.