TSS: Rfmm 130283.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=AK043478:0 AK041780:0 ENSMUST00000103608.4:-4 BC147846:-4 BC147852:-4 U63546:8 AK037797:-22 U88296:87 M21857:120 M21861:120 M35486:120 M35490:120 M21859:128 M35488:128 M21860:295 M35489:295 AF126459:306 KC202835:473 KC202837:473 KC202838:473 KC202830:473 KC202831:473 KC202834:473 KC202842:473 | ||
|annotation=promoter-TSS (id-Trav14d-3-dv8) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (id-Trav14d-3-dv8) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-89 | ||
|end=53315917 | |end=53315917 | ||
|entrez_id= | |entrez_id=Trav14d-3-dv8 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.400000 | |gc_percent=0.400000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Trav14d-3-dv8 | |gene_symbol=Trav14d-3-dv8 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3822547 | |hgnc_mgi_id=MGI:3822547 | ||
|methods=CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=id-Trav14d-3-dv8 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000103608.4:-4 BC147846:-4 BC147852:-4 U63546:8 AK037797:-22 U88296:87 M21857:120 M21861:120 M35486:120 M35490:120 M21859:128 M35488:128 M21860:295 M35489:295 AF126459:306 KC202835:473 KC202837:473 KC202838:473 KC202830:473 KC202831:473 KC202834:473 KC202842:473 | ||
|nearest_unigene=id-Trav14d-3-dv8 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=53315913 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 01:00, 19 March 2025
Basic information about the TSS
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| Source datasets | DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -89 |
|---|---|
| Nearest PromoterID: | id-Trav14d-3-dv8 |
| Entrez ID: | Trav14d-3-dv8 |
| Nearest Unigene: | id-Trav14d-3-dv8 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | T cell receptor alpha variable 14D-3-DV8 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000103608.4:-4 BC147846:-4 BC147852:-4 U63546:8 AK037797:-22 U88296:87 M21857:120 M21861:120 M35486:120 M35490:120 M21859:128 M35488:128 M21860:295 M35489:295 AF126459:306 KC202835:473 KC202837:473 KC202838:473 KC202830:473 KC202831:473 KC202834:473 KC202842:473" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.