TSS: Rfmm 130290.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000103635.3)
|all_trans=U07878:64 AF479020:87 ENSMUST00000103635.3:306 L21700:306 X76971:306 M73761:374 KC202840:473 KC202833:473 KC202845:473 KC202827:473
|annotation=promoter-TSS (id-Trav14n-3)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS (EM10D2470363,EM10E1019128)
|ccre_description=pELS (EM10D2470363,EM10E1019128)
|chr=chr14
|chr=chr14
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=TR_V_gene-promoter-TSS (ENSMUST00000103635.3)
|detailed_annotation=-promoter-TSS (id-Trav14n-3)
|distance=64
|distance=64
|distance_to_tss=-89
|distance_to_tss=-89
|end=53607447
|end=53607447
|entrez_id=ENSMUSG00000076824
|entrez_id=Trav14n-3
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.400000
|gc_percent=0.400000
Line 19: Line 20:
|gene_symbol=Trav14d-3-dv8
|gene_symbol=Trav14d-3-dv8
|gene_synonyms=
|gene_synonyms=
|gene_type=TR_V_gene
|gene_type=
|hgnc_mgi_id=MGI:3822547
|hgnc_mgi_id=MGI:3822547
|methods=CAGE_and_CAGEscan
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000103652.5
|nearest_promoter_id=id-Trav14n-3
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000103635
|nearest_transcripts=AF479020:87 ENSMUST00000103635.3:306 L21700:306 X76971:306 M73761:374 KC202840:473 KC202833:473 KC202845:473 KC202827:473
|nearest_unigene=id-Trav14n-3
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=DRA000914
|species=mouse
|species=mouse
|start=53607442
|start=53607443
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 01:01, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_130290.1
Species:mouse
Chr:chr14
Start:53607443
End:53607447
Strand:+
Source datasetsDRA000914
ProtocolCAGE_and_CAGEscan
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS (EM10D2470363,EM10E1019128)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:U07878:64
GeneID:634322
HGNC/MGI_ID:MGI:3822547
UniProt_ID:
Nearer transcript ids and distances:
  • AF479020:87
  • ENSMUST00000103635.3:306
  • L21700:306
  • X76971:306
  • M73761:374
  • KC202840:473
  • KC202833:473
  • KC202845:473
  • KC202827:473
view more...
Gene_name:T cell receptor alpha variable 14D-3-DV8
Gene_symbol:Trav14d-3-dv8
Gene_synonyms:
Gene_source:MGI:3822547



TATA-Box annotation

Distance to TSS:-89
Nearest PromoterID:id-Trav14n-3
Entrez ID:Trav14n-3
Nearest Unigene:id-Trav14n-3
Nearest Refseq:
Nearest Ensembl:
Gene Name:T cell receptor alpha variable 14D-3-DV8
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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