TSS: Rfmm 130291.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000103635.3)
|all_trans=U07878:29 AF479020:52 ENSMUST00000103635.3:271 L21700:271 X76971:271 M73761:339 KC202840:438 KC202833:438 KC202845:438 KC202827:438
|annotation=promoter-TSS (id-Trav14n-3)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS (EM10D2470363,EM10E1019128)
|ccre_description=pELS (EM10D2470363,EM10E1019128)
|chr=chr14
|chr=chr14
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=TR_V_gene-promoter-TSS (ENSMUST00000103635.3)
|detailed_annotation=-promoter-TSS (id-Trav14n-3)
|distance=29
|distance=29
|distance_to_tss=-58
|distance_to_tss=-58
|end=53607482
|end=53607482
|entrez_id=ENSMUSG00000076824
|entrez_id=Trav14n-3
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
Line 19: Line 20:
|gene_symbol=Trav14d-3-dv8
|gene_symbol=Trav14d-3-dv8
|gene_synonyms=
|gene_synonyms=
|gene_type=TR_V_gene
|gene_type=
|hgnc_mgi_id=MGI:3822547
|hgnc_mgi_id=MGI:3822547
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000103652.5
|nearest_promoter_id=id-Trav14n-3
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000103635
|nearest_transcripts=AF479020:52 ENSMUST00000103635.3:271 L21700:271 X76971:271 M73761:339 KC202840:438 KC202833:438 KC202845:438 KC202827:438
|nearest_unigene=id-Trav14n-3
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=mouse
|species=mouse
|start=53607470
|start=53607471
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 01:01, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_130291.1
Species:mouse
Chr:chr14
Start:53607471
End:53607482
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS (EM10D2470363,EM10E1019128)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:U07878:29
GeneID:634322
HGNC/MGI_ID:MGI:3822547
UniProt_ID:
Nearer transcript ids and distances:
  • AF479020:52
  • ENSMUST00000103635.3:271
  • L21700:271
  • X76971:271
  • M73761:339
  • KC202840:438
  • KC202833:438
  • KC202845:438
  • KC202827:438
view more...
Gene_name:T cell receptor alpha variable 14D-3-DV8
Gene_symbol:Trav14d-3-dv8
Gene_synonyms:
Gene_source:MGI:3822547



TATA-Box annotation

Distance to TSS:-58
Nearest PromoterID:id-Trav14n-3
Entrez ID:Trav14n-3
Nearest Unigene:id-Trav14n-3
Nearest Refseq:
Nearest Ensembl:
Gene Name:T cell receptor alpha variable 14D-3-DV8
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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