TSS: Rfmm 131982.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (XM_017315930.3, intron 1 of 29) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001162365.1, intron 1 of 30) | ||
|distance=21 | |distance=21 | ||
|distance_to_tss= | |distance_to_tss=-3715 | ||
|end=66512201 | |end=66512201 | ||
|entrez_id= | |entrez_id=Ptk2b | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100043676 | |gene_id=100043676 | ||
|gene_name= | |gene_name=Ptk2b | ||
|gene_source=MGI:3782766 | |gene_source=MGI:3782766 | ||
|gene_symbol=Gm4583 | |gene_symbol=Gm4583 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3782766 | |hgnc_mgi_id=MGI:3782766 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_036158525.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_017315928 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=66512194 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= |
Latest revision as of 04:57, 22 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | - |
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Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -3715 |
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Nearest PromoterID: | XM_036158525.1 |
Entrez ID: | Ptk2b |
Nearest Unigene: | XM_017315928 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Ptk2b |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.000000 |
GC%: | 0.500000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.