TSS: Rfmm 133952.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_008929.3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2485901,EM10E1024715) | |ccre_description=PLS,CTCF-bound (EM10D2485901,EM10E1024715) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.181818 | |cpg_percent=0.181818 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_008929.3) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=27 | ||
|end=119175404 | |end=119175404 | ||
|entrez_id= | |entrez_id=Dnajc3 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100037258 | |gene_id=100037258 | ||
|gene_name= | |gene_name=Dnajc3 | ||
|gene_source=MGI:107373 | |gene_source=MGI:107373 | ||
|gene_symbol=Dnajc3 | |gene_symbol=Dnajc3 | ||
|gene_synonyms=Dnajc3 Dnajc3a Dnajc3b Prkri mp58 p58IPK | |gene_synonyms=Dnajc3 Dnajc3a Dnajc3b Prkri mp58 p58IPK | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:107373 | |hgnc_mgi_id=MGI:107373 | ||
|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_008929.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_008929 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=119175338 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000022734.9 AK146097 AK148270 BC013766 U28423 | |transcript_name=ENSMUST00000022734.9 AK146097 AK148270 BC013766 U28423 | ||
|tss_cluster_detected= | |tss_cluster_detected=3 | ||
|tss_id=rfmm_133952.1 | |tss_id=rfmm_133952.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3UFV9 Q3UKA1 | |uniprot_id=Q3UFV9 Q3UKA1 | ||
}} | }} | ||
Latest revision as of 05:29, 22 December 2023
Basic information about the TSS
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| Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2485901,EM10E1024715) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_008929.3 |
| Entrez ID: | Dnajc3 |
| Nearest Unigene: | NM_008929 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Dnajc3 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.181818 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.