TSS: Rfmm 13860.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000028129.13) |ccre_category=PLS |ccre_description=PLS (EM10D1681432,EM10E0692120) |chr=chr2 |cpg_percent=0.055556 |detailed_a...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000028129.13)
|all_trans=LF193268:64 MA428845:64 ENSMUST00000123643.2:65 NM_019488.5:65 NM_001356409.1:65 NR_151460.1:65 NR_151461.1:65 ENSMUST00000028129.13:66 AK155792:66 AK081806:76 ENSMUST00000195863.2:77 ENSMUST00000191777.6:80 AK170319:80 AK141193:80 BC090993:92 Y17802:110 AJ245936:115 ENSMUST00000130769.2:129 ENSMUST00000153484.7:131 ENSMUST00000194066.6:131 ENSMUST00000193695.2:131 AY856043:131 AY856044:131 AY856045:131 AY856046:131 AF232061:140
|annotation=promoter-TSS (NM_001356409.1)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS (EM10D1681432,EM10E0692120)
|ccre_description=PLS (EM10D1681432,EM10E0692120)
|chr=chr2
|chr=chr2
|cpg_percent=0.055556
|cpg_percent=0.055556
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000028129.13)
|detailed_annotation=-promoter-TSS (NM_001356409.1)
|distance=64
|distance=64
|distance_to_tss=-74
|distance_to_tss=-74
|end=32872178
|end=32872178
|entrez_id=ENSMUSG00000026791
|entrez_id=Slc2a8
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.473684
|gc_percent=0.473684
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000123643.2
|nearest_promoter_id=NR_151460.1
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000194066
|nearest_transcripts=ENSMUST00000123643.2:65 NM_019488.5:65 NM_001356409.1:65 NR_151460.1:65 NR_151461.1:65 ENSMUST00000028129.13:66 AK155792:66 AK081806:76 ENSMUST00000195863.2:77 ENSMUST00000191777.6:80 AK170319:80 AK141193:80 BC090993:92 Y17802:110 AJ245936:115 ENSMUST00000130769.2:129 ENSMUST00000153484.7:131 ENSMUST00000194066.6:131 ENSMUST00000193695.2:131 AY856043:131 AY856044:131 AY856045:131 AY856046:131 AF232061:140
|nearest_unigene=NM_019488
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=mouse
|species=mouse
|start=32872159
|start=32872160
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 03:17, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_13860.1
Species:mouse
Chr:chr2
Start:32872160
End:32872178
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D1681432,EM10E0692120)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF193268:64
MA428845:64
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000123643.2:65
  • NM_019488.5:65
  • NM_001356409.1:65
  • NR_151460.1:65
  • NR_151461.1:65
  • ENSMUST00000028129.13:66
  • AK155792:66
  • AK081806:76
  • ENSMUST00000195863.2:77
  • ENSMUST00000191777.6:80
  • AK170319:80
  • AK141193:80
  • BC090993:92
  • Y17802:110
  • AJ245936:115
  • ENSMUST00000130769.2:129
  • ENSMUST00000153484.7:131
  • ENSMUST00000194066.6:131
  • ENSMUST00000193695.2:131
  • AY856043:131
  • AY856044:131
  • AY856045:131
  • AY856046:131
  • AF232061:140
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-74
Nearest PromoterID:NR_151460.1
Entrez ID:Slc2a8
Nearest Unigene:NM_019488
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:0.055556
GC%:0.473684
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "ENSMUST00000123643.2:65 NM_019488.5:65 NM_001356409.1:65 NR_151460.1:65 NR_151461.1:65 ENSMUST00000028129.13:66 AK155792:66 AK081806:76 ENSMUST00000195863.2:77 ENSMUST00000191777.6:80 AK170319:80 AK141193:80 BC090993:92 Y17802:110 AJ245936:115 ENSMUST00000130769.2:129 ENSMUST00000153484.7:131 ENSMUST00000194066.6:131 ENSMUST00000193695.2:131 AY856043:131 AY856044:131 AY856045:131 AY856046:131 AF232061:140" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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