TSS: Rfmm 139880.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=NM_021514.4:-10 D21868:-13 AF249894:28 BC005526:28 D21865:70 | ||
|annotation=promoter-TSS (NM_021514.4) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EM10D2516082,EM10E1036913) | |ccre_description=dELS (EM10D2516082,EM10E1036913) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.045455 | |cpg_percent=0.045455 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_021514.4) | ||
|distance=-10 | |distance=-10 | ||
|distance_to_tss= | |distance_to_tss=21 | ||
|end=98009973 | |end=98009973 | ||
|entrez_id= | |entrez_id=Pfkm | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.478261 | |gc_percent=0.478261 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_021514.4 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=D21868:-13 AF249894:28 BC005526:28 D21865:70 | ||
|nearest_unigene=NM_001357688 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start= | |start=98009951 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 03:39, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS (EM10D2516082,EM10E1036913) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_021514.4 |
| Entrez ID: | Pfkm |
| Nearest Unigene: | NM_001357688 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.045455 |
| GC%: | 0.478261 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |