TSS: Rfmm 144165.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000114850.3) |ccre_category=N |ccre_description=N |chr=chr16 |cpg_percent=0.000000 |detailed_annotation=protein_coding-promote...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001001332.2) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001001332.2) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-7 | |distance_to_tss=-7 | ||
|end=36154709 | |end=36154709 | ||
|entrez_id= | |entrez_id=Cstdc6 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.352941 | |gc_percent=0.352941 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100038854 | |gene_id=100038854 | ||
|gene_name= | |gene_name=Cstdc6 | ||
|gene_source=MGI:3696881 | |gene_source=MGI:3696881 | ||
|gene_symbol=Cstdc6 | |gene_symbol=Cstdc6 | ||
|gene_synonyms=BC117090 Gm1975 | |gene_synonyms=BC117090 Gm1975 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3696881 | |hgnc_mgi_id=MGI:3696881 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001001332.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001001332 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start= | |start=36154693 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 08:18, 22 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001001332.2 |
| Entrez ID: | Cstdc6 |
| Nearest Unigene: | NM_001001332 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Cstdc6 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.352941 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.