TSS: Rfmm 149573.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENSMUST00000024817.15:0 ENSMUST00000162588.3:0 ENSMUST00000172485.8:0 ENSMUST00000234498.2:0 ENSMUST00000130871.2:0 ENSMUST00000161952.2:0 NM_021419.2:0 NR_132314.1:0 AK147168:0 BC021778:0 AK076180:0 AK172991:0 ENSMUST00000234362.2:40 CT010295:40 AK219887:129 AK019779:355 | ||
|annotation=promoter-TSS (NM_021419.2) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2554396,EM10E1053265) | |ccre_description=PLS,CTCF-bound (EM10D2554396,EM10E1053265) | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.113475 | |cpg_percent=0.113475 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_021419.2) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=68 | ||
|end=29833902 | |end=29833902 | ||
|entrez_id= | |entrez_id=Rnf8 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.669014 | |gc_percent=0.669014 | ||
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|gene_symbol=Gm28043 Rnf8 | |gene_symbol=Gm28043 Rnf8 | ||
|gene_synonyms=3830404E21Rik AIP37 | |gene_synonyms=3830404E21Rik AIP37 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1929069 MGI:5547779 | |hgnc_mgi_id=MGI:1929069 MGI:5547779 | ||
|methods=CAGE{{!}}TSS_database{{!}}deepCAGE{{!}}CAGE_and_CAGEscan{{!}}C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_021419.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000234362.2:40 CT010295:40 AK219887:129 AK019779:355 | ||
|nearest_unigene=NM_021419 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}GSE117655{{!}}DRA000914{{!}}PRJDB10397 | |||
|species=mouse | |species=mouse | ||
|start= | |start=29833761 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991 | |transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991 | ||
|tss_cluster_detected=5 | |||
|tss_id=rfmm_149573.1 | |tss_id=rfmm_149573.1 | ||
|tss_id_v3=mm_137788.1;mm_137787.1;mm_137789.1 | |tss_id_v3=mm_137788.1;mm_137787.1;mm_137789.1 | ||
Latest revision as of 06:19, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|GSE117655|DRA000914|PRJDB10397 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|deepCAGE|CAGE_and_CAGEscan|C1CAGE | |||||||||||||||
| TSS cluster detected* | 5 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2554396,EM10E1053265) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_021419.2 |
| Entrez ID: | Rnf8 |
| Nearest Unigene: | NM_021419 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | predicted gene, 28043; ring finger protein 8 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.113475 |
| GC%: | 0.669014 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.