TSS: Rfmm 151870.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |all_trans=AY194859:20 AB352347:-72 AB350881:86 AB352917:86 BC042411:-360 DQ540853:408 DQ541113:-436 DQ553409:-448 AB349980:-456 K01380:484 M55272:500 | ||
|annotation=TTS (XM_036160881.1) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-TTS (XM_036160881.1) | ||
|distance=20 | |distance=20 | ||
|distance_to_tss= | |distance_to_tss=1297 | ||
|end=40158542 | |end=40158542 | ||
|entrez_id= | |entrez_id=Rn18s-rs5 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Mir199b | |gene_symbol=Mir199b | ||
|gene_synonyms=Mirn199b mmu-mir-199b | |gene_synonyms=Mirn199b mmu-mir-199b | ||
|gene_type= | |gene_type=NA | ||
|hgnc_mgi_id=MGI:2676865 | |hgnc_mgi_id=MGI:2676865 | ||
|methods=deepCAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=Rn18s-rs5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=AB352347:-72 AB350881:86 AB352917:86 BC042411:-360 DQ540853:408 DQ541113:-436 DQ553409:-448 AB349980:-456 K01380:484 M55272:500 | ||
|nearest_unigene=Rn18s-rs5 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=GSE117655 | |||
|species=mouse | |species=mouse | ||
|start= | |start=40158542 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:57, 19 March 2025
Basic information about the TSS
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| Source datasets | GSE117655 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | deepCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1297 |
|---|---|
| Nearest PromoterID: | Rn18s-rs5 |
| Entrez ID: | Rn18s-rs5 |
| Nearest Unigene: | Rn18s-rs5 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | microRNA 199b |
| Gene Alias: | |
| Gene Type: | NA |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.