TSS: Hg 101775.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=135525 |entrez_id=414319 |gc_percent=0.517413 |gene_alias=C9orf107|bA785H23.1 |gene_description=long intergenic non-protein cod...") |
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{{TSSDetail | {{TSSDetail | ||
|bA785H23.1= | |||
|chr=chr9 | |||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=NA | |||
|distance_to_tss=135525 | |distance_to_tss=135525 | ||
|end=102655166 | |||
|end_of_center_position=102655162 | |||
|entrez_id=414319 | |entrez_id=414319 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=C9orf107 | |gene_alias=C9orf107{{!}}bA785H23.1 | ||
|gene_description=long intergenic non-protein coding RNA 587 | |gene_description=long intergenic non-protein coding RNA 587 | ||
|gene_name=LINC00587 | |gene_name=LINC00587 | ||
Line 12: | Line 17: | ||
|nearest_refseq=NR_103830 | |nearest_refseq=NR_103830 | ||
|nearest_unigene=Hs.385790 | |nearest_unigene=Hs.385790 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=102655157 | |||
|start_of_center_position=102655161 | |||
|strand=- | |||
|tata_box=-35(GGTTTTATAAGG,-,0.00),17(CGCCATATAGGA,-,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101775.1 | |tss_id=hg_101775.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 135525 |
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Nearest PromoterID: | NR_103830 |
Entrez ID: | 414319 |
Nearest Unigene: | Hs.385790 |
Nearest Refseq: | NR_103830 |
Nearest Ensembl: | ENSG00000204250 |
Gene Name: | LINC00587 |
Gene Alias: | C9orf107|bA785H23.1 |
Gene Description: | long intergenic non-protein coding RNA 587 |
Gene Type: | ncRNA |
CpG%: | 0.035 |
GC%: | 0.517413 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GGTTTTATAAGG,-,0.00),17(CGCCATATAGGA,-,0.00) |