TSS: Rfmm 159966.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=AK185964:0 AK189561:0 AK184112:248 | ||
|annotation=exon (NM_001038608.3, exon 4 of 4) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.034483 | |cpg_percent=0.034483 | ||
|detailed_annotation= | |detailed_annotation=-exon (NM_001038608.3, exon 4 of 4) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=4680 | ||
|end=80254808 | |end=80254808 | ||
|entrez_id= | |entrez_id=Txnl4a | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.554286 | |gc_percent=0.554286 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Txnl4a | |gene_symbol=Txnl4a | ||
|gene_synonyms=D18Wsu98e ENSMUSG00000057130 Txnl4 U5-15kDa | |gene_synonyms=D18Wsu98e ENSMUSG00000057130 Txnl4 U5-15kDa | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1351613 | |hgnc_mgi_id=MGI:1351613 | ||
|methods=CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_168913.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=AK184112:248 | ||
|nearest_unigene=NM_001042408 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=80254634 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 09:12, 19 March 2025
Basic information about the TSS
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| Source datasets | DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4680 |
|---|---|
| Nearest PromoterID: | NR_168913.1 |
| Entrez ID: | Txnl4a |
| Nearest Unigene: | NM_001042408 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | thioredoxin-like 4A |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.034483 |
| GC%: | 0.554286 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.