TSS: Hg 101787.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=47159 |entrez_id=55335 |gc_percent=0.537313 |gene_alias=FP944|NIPSNAP3|SNAP1 |gene_description=nipsnap homolog 3B |gene_name=NI...") |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NIPSNAP3= | |||
|SNAP1= | |||
|all_trans=LF354657:23 MA590234:23 | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance_to_tss= | |distance=23 | ||
|distance_to_tss=46771 | |||
|end=104810907 | |||
|end_of_center_position=104810900 | |||
|entrez_id=55335 | |entrez_id=55335 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
|gene_alias=FP944 | |gene_alias=FP944{{!}}NIPSNAP3{{!}}SNAP1 | ||
|gene_description=nipsnap homolog 3B | |gene_description=nipsnap homolog 3B | ||
|gene_name=NIPSNAP3B | |gene_name=NIPSNAP3B | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_018376 | |nearest_refseq=NM_018376 | ||
|nearest_unigene=Hs.429294 | |nearest_unigene=Hs.429294 | ||
|num_trans=2 | |||
|species=human | |||
|start=104810892 | |||
|start_of_center_position=104810899 | |||
|strand=- | |||
|transcript_name=LF354657 MA590234 | |||
|tss_classification=no | |||
|tss_id=hg_101787.1 | |tss_id=hg_101787.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 46771 |
|---|---|
| Nearest PromoterID: | NR_130760 |
| Entrez ID: | 55335 |
| Nearest Unigene: | Hs.429294 |
| Nearest Refseq: | NM_018376 |
| Nearest Ensembl: | ENSG00000165028 |
| Gene Name: | NIPSNAP3B |
| Gene Alias: | FP944|NIPSNAP3|SNAP1 |
| Gene Description: | nipsnap homolog 3B |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |