TSS: Rfmm 170873.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000130879.2)
|all_trans=AJ277831:11 NM_030688.2:-27 AK045976:-27 ENSMUST00000113063.8:-173 ENSMUST00000130879.2:235 AK039155:235
|annotation=promoter-TSS (NM_030688.2)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chrX
|chr=chrX
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000130879.2)
|detailed_annotation=-promoter-TSS (NM_030688.2)
|distance=11
|distance=11
|distance_to_tss=174
|distance_to_tss=28
|end=136471533
|end=136471533
|entrez_id=ENSMUSG00000059203
|entrez_id=Il1rapl2
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
Line 19: Line 20:
|gene_symbol=Il1rapl2
|gene_symbol=Il1rapl2
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=MGI:1913106
|hgnc_mgi_id=MGI:1913106
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000113063.8
|nearest_promoter_id=NM_030688.2
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000113063
|nearest_transcripts=NM_030688.2:-27 AK045976:-27 ENSMUST00000113063.8:-173 ENSMUST00000130879.2:235 AK039155:235
|nearest_unigene=NM_030688
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=mouse
|species=mouse
|start=136471529
|start=136471530
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 12:11, 19 March 2025

Basic information about the TSS


TSS ID:rfmm_170873.1
Species:mouse
Chr:chrX
Start:136471530
End:136471533
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:AJ277831:11
GeneID:60367
HGNC/MGI_ID:MGI:1913106
UniProt_ID:
Nearer transcript ids and distances:
  • NM_030688.2:-27
  • AK045976:-27
  • ENSMUST00000113063.8:-173
  • ENSMUST00000130879.2:235
  • AK039155:235
view more...
Gene_name:interleukin 1 receptor accessory protein-like 2
Gene_symbol:Il1rapl2
Gene_synonyms:
Gene_source:MGI:1913106



TATA-Box annotation


Distance to TSS:28
Nearest PromoterID:NM_030688.2
Entrez ID:Il1rapl2
Nearest Unigene:NM_030688
Nearest Refseq:
Nearest Ensembl:
Gene Name:interleukin 1 receptor accessory protein-like 2
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.