TSS: Rfmm 19599.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (XR_004939188.1, intron 1 of 10) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2659962,EM10E1097134) | |ccre_description=PLS,CTCF-bound (EM10D2659962,EM10E1097134) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.066667 | |cpg_percent=0.066667 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001159593.1, intron 1 of 5) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=416 | ||
|end=129041117 | |end=129041117 | ||
|entrez_id= | |entrez_id=Slc20a1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.437500 | |gc_percent=0.437500 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100043431 | |gene_id=100043431 | ||
|gene_name= | |gene_name=Slc20a1 | ||
|gene_source=MGI:3782614 | |gene_source=MGI:3782614 | ||
|gene_symbol=Gm4430 | |gene_symbol=Gm4430 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3782614 | |hgnc_mgi_id=MGI:3782614 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_015747.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_036159901 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=129041102 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 16:37, 22 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2659962,EM10E1097134) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 416 |
|---|---|
| Nearest PromoterID: | NM_015747.2 |
| Entrez ID: | Slc20a1 |
| Nearest Unigene: | XM_036159901 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Slc20a1 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.066667 |
| GC%: | 0.437500 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.