TSS: Rfmm 23170.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |all_trans=AK187561:0 AK213035:0 AK197493:0 AK199682:0 AK180745:-65 AK190120:-131 AK193906:339 AK177731:339 AK188596:-385 AK197639:-385 AK187458:-435 | ||
|annotation=TTS (XR_004941010.1) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.041667 | |cpg_percent=0.041667 | ||
|detailed_annotation= | |detailed_annotation=-TTS (XR_004941010.1) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=11167 | ||
|end=167485484 | |end=167485484 | ||
|entrez_id= | |entrez_id=Gm31852 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.680000 | |gc_percent=0.680000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Peds1 | |gene_symbol=Peds1 | ||
|gene_synonyms=Tmem189 | |gene_synonyms=Tmem189 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2142624 | |hgnc_mgi_id=MGI:2142624 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XR_375265.5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=AK180745:-65 AK190120:-131 AK193906:339 AK177731:339 AK188596:-385 AK197639:-385 AK187458:-435 | ||
|nearest_unigene=XR_375265 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=167485460 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 14:13, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 11167 |
|---|---|
| Nearest PromoterID: | XR_375265.5 |
| Entrez ID: | Gm31852 |
| Nearest Unigene: | XR_375265 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | plasmanylethanolamine desaturase 1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.041667 |
| GC%: | 0.680000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.