TSS: Rfmm 23176.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000006587.7) |ccre_category=PLS |ccre_description=PLS (EM10D2674124,EM10E1103347) |chr=chr2 |cpg_percent=0.210526 |detailed_an...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENSMUST00000006587.7:0 ENSMUST00000125874.2:0 NM_145538.2:0 AK151326:0 AK170042:0 BC002270:0 AK088196:0 AK151705:0 ENSMUST00000125544.3:19 AK201529:125 | ||
|annotation=promoter-TSS (NM_145538.2) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EM10D2674124,EM10E1103347) | |ccre_description=PLS (EM10D2674124,EM10E1103347) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.210526 | |cpg_percent=0.210526 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_145538.2) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-9 | ||
|end=167503511 | |end=167503511 | ||
|entrez_id= | |entrez_id=Tmem189 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.792208 | |gc_percent=0.792208 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Peds1 | |gene_symbol=Peds1 | ||
|gene_synonyms=Tmem189 | |gene_synonyms=Tmem189 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2142624 | |hgnc_mgi_id=MGI:2142624 | ||
|methods=deepCAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_145538.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000125544.3:19 AK201529:125 | ||
|nearest_unigene=NM_145538 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=GSE117655{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=167503435 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000006587.7 ENSMUST00000125874.2 AK151326 AK170042 BC002270 AK088196 AK151705 | |transcript_name=ENSMUST00000006587.7 ENSMUST00000125874.2 AK151326 AK170042 BC002270 AK088196 AK151705 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfmm_23176.1 | |tss_id=rfmm_23176.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q99LQ7 | |uniprot_id=Q99LQ7 | ||
}} | }} | ||
Latest revision as of 14:13, 19 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | GSE117655|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2674124,EM10E1103347) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_145538.2 |
| Entrez ID: | Tmem189 |
| Nearest Unigene: | NM_145538 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | plasmanylethanolamine desaturase 1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.210526 |
| GC%: | 0.792208 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.