TSS: Rfmm 23823.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000109027.9) |ccre_category=N |ccre_description=N |chr=chr2 |cpg_percent=0.000000 |detailed_annotation=protein_coding-promoter...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=exon (XM_017319408.3, exon 1 of 4) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-exon (XM_017319408.3, exon 1 of 4) | ||
|distance=31 | |distance=31 | ||
|distance_to_tss= | |distance_to_tss=446 | ||
|end=175495476 | |end=175495476 | ||
|entrez_id= | |entrez_id=Gm4724 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.285714 | |gc_percent=0.285714 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100043915 | |gene_id=100043915 | ||
|gene_name= | |gene_name=Gm4724 | ||
|gene_source=MGI:3782422 | |gene_source=MGI:3782422 | ||
|gene_symbol=Zfp969 | |gene_symbol=Zfp969 | ||
|gene_synonyms=Gm4245 | |gene_synonyms=Gm4245 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3782422 | |hgnc_mgi_id=MGI:3782422 | ||
|methods=CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_030246015.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_036156808 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=175495470 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:46, 22 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 446 |
|---|---|
| Nearest PromoterID: | XM_030246015.2 |
| Entrez ID: | Gm4724 |
| Nearest Unigene: | XM_036156808 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gm4724 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.285714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.