TSS: Rfmm 29304.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |all_trans= | ||
|annotation=exon (NM_028925.1, exon 7 of 15) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EM10D1794748,EM10E0737701) | |ccre_description=dELS,CTCF-bound (EM10D1794748,EM10E0737701) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.083333 | |cpg_percent=0.083333 | ||
|detailed_annotation= | |detailed_annotation=-exon (NM_028925.1, exon 7 of 15) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=5130 | ||
|end=96626592 | |end=96626592 | ||
|entrez_id= | |entrez_id=Gm22581 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.692308 | |gc_percent=0.692308 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XR_004941697.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts= | ||
|nearest_unigene=XR_004941697 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB10397 | |||
|species=mouse | |species=mouse | ||
|start= | |start=96626580 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:53, 19 March 2025
Basic information about the TSS
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| Source datasets | PRJDB10397 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS,CTCF-bound (EM10D1794748,EM10E0737701) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5130 |
|---|---|
| Nearest PromoterID: | XR_004941697.1 |
| Entrez ID: | Gm22581 |
| Nearest Unigene: | XR_004941697 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.083333 |
| GC%: | 0.692308 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |