TSS: Rfmm 34717.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000151903.8, intron 1 of 5) |ccre_category=pELS |ccre_description=pELS (EM10D2729358,EM10E1124286) |chr=chr4 |cpg_percent=0.000000 |...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans=LF271562:191 MA507139:191 ENSMUST00000151903.8:-295 AK044073:-297 ENSMUST00000086563.11:-300 NM_029086.2:-300 AK153576:-300 BC092543:-301 AK017931:-310 AK031727:-312 ENSMUST00000030015.6:-314 NM_001347095.1:-314 AK052584:-314 LF194384:-315 MA429961:-315 | ||
|annotation=intron (XR_390347.2, intron 1 of 5) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EM10D2729358,EM10E1124286) | |ccre_description=pELS (EM10D2729358,EM10E1124286) | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001347095.1, intron 1 of 4) | ||
|distance=191 | |distance=191 | ||
|distance_to_tss= | |distance_to_tss=310 | ||
|end=46389123 | |end=46389123 | ||
|entrez_id= | |entrez_id=Trmo | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.400000 | |gc_percent=0.400000 | ||
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|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_029086.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000151903.8:-295 AK044073:-297 ENSMUST00000086563.11:-300 NM_029086.2:-300 AK153576:-300 BC092543:-301 AK017931:-310 AK031727:-312 ENSMUST00000030015.6:-314 NM_001347095.1:-314 AK052584:-314 LF194384:-315 MA429961:-315 | ||
|nearest_unigene=XM_017320423 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=46389104 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:24, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS (EM10D2729358,EM10E1124286) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 310 |
|---|---|
| Nearest PromoterID: | NM_029086.2 |
| Entrez ID: | Trmo |
| Nearest Unigene: | XM_017320423 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |