TSS: Rfmm 35521.1: Difference between revisions

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Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000095051.6)
|annotation=promoter-TSS (NM_001199936.1)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chr4
|chr=chr4
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000095051.6)
|detailed_annotation=-promoter-TSS (NM_001199936.1)
|distance=75
|distance=75
|distance_to_tss=-75
|distance_to_tss=21
|end=61437843
|end=61437843
|entrez_id=ENSMUSG00000078675
|entrez_id=Mup16
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.000000
|gc_percent=0.000000
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=100039177
|gene_id=100039177
|gene_name=major urinary protein 16
|gene_name=Mup16
|gene_source=MGI:3780250
|gene_source=MGI:3780250
|gene_symbol=Mup16
|gene_symbol=Mup16
|gene_synonyms=Gm2083
|gene_synonyms=Gm2083
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=MGI:3780250
|hgnc_mgi_id=MGI:3780250
|methods=TSS_database
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000107483.8
|nearest_promoter_id=XM_006537489.4
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000107483
|nearest_unigene=NM_001199936
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=EPD
|species=mouse
|species=mouse
|start=61437842
|start=61437843
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 20:58, 22 December 2023

Basic information about the TSS


TSS ID:rfmm_35521.1
Species:mouse
Chr:chr4
Start:61437843
End:61437843
Strand:-
Source datasetsEPD
ProtocolTSS_database
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Transcript_name:ENSMUST00000107483.8
Distance:75
GeneID:100039177
HGNC/MGI_ID:MGI:3780250
UniProt_ID:A2CGB6
Gene_name:Mup16
Gene_symbol:Mup16
Gene_synonyms:Gm2083
Gene_source:MGI:3780250



TATA-Box annotation


Distance to TSS:21
Nearest PromoterID:XM_006537489.4
Entrez ID:Mup16
Nearest Unigene:NM_001199936
Nearest Refseq:
Nearest Ensembl:
Gene Name:Mup16
Gene Alias:
Gene Description:
Gene Type:
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.