TSS: Rfmm 42822.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENSMUST00000199955.5:0 ENSMUST00000196580.5:0 NM_011075.2:0 AK030328:0 ENSMUST00000009058.10:22 M14757:22 BC141363:27 BC150811:27 LF194841:-39 MA430418:-39 | ||
|annotation=promoter-TSS (NM_011075.2) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EM10D2767439,EM10E1141169) | |ccre_description=PLS (EM10D2767439,EM10E1141169) | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.041667 | |cpg_percent=0.041667 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_011075.2) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=5 | ||
|end=8848164 | |end=8848164 | ||
|entrez_id= | |entrez_id=Abcb1b | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.720000 | |gc_percent=0.720000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Abcb1b | |gene_symbol=Abcb1b | ||
|gene_synonyms=Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr | |gene_synonyms=Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:97568 | |hgnc_mgi_id=MGI:97568 | ||
|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_011075.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000009058.10:22 M14757:22 BC141363:27 BC150811:27 LF194841:-39 MA430418:-39 | ||
|nearest_unigene=NM_011075 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start= | |start=8848140 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 AK030328 | |transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 AK030328 | ||
|tss_cluster_detected= | |tss_cluster_detected=3 | ||
|tss_id=rfmm_42822.1 | |tss_id=rfmm_42822.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A0G2JGL4 | |uniprot_id=A0A0G2JGL4 | ||
}} | }} | ||
Latest revision as of 19:39, 19 March 2025
Basic information about the TSS
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| Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2767439,EM10E1141169) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_011075.2 |
| Entrez ID: | Abcb1b |
| Nearest Unigene: | NM_011075 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | ATP-binding cassette, sub-family B (MDR/TAP), member 1B |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.041667 |
| GC%: | 0.720000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.