TSS: Hg 101823.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-136819 |entrez_id=19 |gc_percent=0.462687 |gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD |gene_description=ATP binding cassette subfam...") |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|ABC1= | |||
|CERP= | |||
|HDLDT1= | |||
|TGD= | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance_to_tss=- | |distance=NA | ||
|distance_to_tss=-136910 | |||
|end=105065085 | |||
|end_of_center_position=105065065 | |||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
|gene_alias=ABC-1 | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD | ||
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_name=ABCA1 | |gene_name=ABCA1 | ||
| Line 12: | Line 20: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
|num_trans=0 | |||
|species=human | |||
|start=105065044 | |||
|start_of_center_position=105065064 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101823.1 | |tss_id=hg_101823.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:49, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -136910 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |