TSS: Rfmm 53365.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_026632.4) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EM10D2814617,EM10E1161170) | |ccre_description=PLS (EM10D2814617,EM10E1161170) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.080808 | |cpg_percent=0.080808 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_026632.4) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=128 | ||
|end=8259466 | |end=8259466 | ||
|entrez_id= | |entrez_id=Umad1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.680000 | |gc_percent=0.680000 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100036521 | |gene_id=100036521 | ||
|gene_name= | |gene_name=Umad1 | ||
|gene_source=MGI:3840148 MGI:5753638 | |gene_source=MGI:3840148 MGI:5753638 | ||
|gene_symbol=Gm45062 Umad1 | |gene_symbol=Gm45062 Umad1 | ||
|gene_synonyms=Gm16039 | |gene_synonyms=Gm16039 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3840148 MGI:5753638 | |hgnc_mgi_id=MGI:3840148 MGI:5753638 | ||
|methods=CAGE{{!}}CAGE_and_CAGEscan{{!}}C1CAGE{{!}}deepCAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001302353.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001302354 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJDB10397{{!}}GSE117655 | |||
|species=mouse | |species=mouse | ||
|start= | |start=8259367 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000162034.8 ENSMUST00000160705.8 ENSMUST00000159433.8 ENSMUST00000161400.2 ENSMUST00000162564.7 AK009885 | |transcript_name=ENSMUST00000162034.8 ENSMUST00000160705.8 ENSMUST00000159433.8 ENSMUST00000161400.2 ENSMUST00000162564.7 AK009885 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfmm_53365.1 | |tss_id=rfmm_53365.1 | ||
|tss_id_v3=mm_49107.1;mm_49108.1 | |tss_id_v3=mm_49107.1;mm_49108.1 | ||
Latest revision as of 01:52, 23 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914|PRJDB10397|GSE117655 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|CAGE_and_CAGEscan|C1CAGE|deepCAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2814617,EM10E1161170) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 128 |
|---|---|
| Nearest PromoterID: | NM_001302353.1 |
| Entrez ID: | Umad1 |
| Nearest Unigene: | NM_001302354 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Umad1 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.080808 |
| GC%: | 0.680000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.