Template: Test area: Difference between revisions

Latest revision as of 13:34, 7 March 2018

Basic information about the TSS

TSS ID:	{{{tss_id}}}
Species:	{{{species}}}
Chr:	{{{chr}}}
TSS Classification:	{{{tss_classification}}}

Start:	{{{start}}}
End:	{{{end}}}
Strand:	{{{strand}}}
TSS Score:	{{{strand}}}

Gene and protein annotation

Transcript_name:	{{{transcript_name}}}
Distance:	{{{distance}}}
GeneID:	{{{gene_id}}}
HGNC/MGI_ID:	{{{hgnc_mgi_id}}}
UniProt_ID:	{{{uniprot_id}}}

Gene_name:	{{{gene_name}}}
Gene_symbol:	{{{gene_symbol}}}
Gene_synonyms:	{{{gene_synonyms}}}
Gene_source:	{{{gene_source}}}

Transcript annotation

Transcript_name:	{{{transcript_name}}}
Distance:	{{{distance}}}
Num_trans:	{{{num_trans}}}
All_trans:	:{{{all_trans}}}

TATA-Box annotation

Distance to TSS:	{{{distance_to_tss}}}
Nearest PromoterID:	{{{nearest_promoter_id}}}
Entrez ID:	{{{entrez_id}}}
Nearest Unigene:	{{{nearest_unigene}}}
Nearest Refseq:	{{{nearest_refseq}}}
Nearest Ensembl:	{{{nearest_ensembl}}}
Gene Name:	{{{gene_name}}}
Gene Alias:	{{{gene_alias}}}
Gene Description:	{{{gene_description}}}
Gene Type:	{{{gene_type}}}
CpG%:	{{{cpg_percent}}}
GC%:	{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	{{{tata_box}}}

{{{param1}}} × 10^{{{param2}}} m²

@@ Line 1: / Line 1: @@
-<noinclude>[[Category:Sample pages]]
+{{Loading|loadingimage=sprites.gif}}<noinclude>[[Category:Sample pages]]</noinclude>
-This [[Help:Semantic templates|semantic template]] provides a simple way to simultaneously annotate a page with the property [[Property:Surface area|surface area]] and display its value in a standardized scientific notation.
+<html><style>
+	table {
+		border-collapse:collapse;
+		}
+.inner tr{
+		border-bottom-style: dotted;
+		border-bottom-width: thin;
+		}
+.section_head{
+font-weight: bold;
+font-size: 16px;
+font-style:;
+}
-Usage: this takes two parameters, the value of the area and the power of 10 for it,
+.item_label {
-for example <code><nowiki>{{Surface area|6.088|18}}</nowiki></code>
+    text-align:left;
+    width:60px;
-It assumes the value is in square meters.
+}
+.item_label_long {
-Here's the actual template "code": </noinclude>[[Test area::{{{param1}}}e{{{param2}}} m²|{{{param1}}} × 10<sup>{{{param2}}}</sup> m²]]
+    text-align:left;
+    width:200px;
+    word-wrap:break-word;
+}
+.ttb {
+    width:400px;
+    word-wrap:break-word;
+}
+</style></html>
+<span class="section_head">Basic information about the TSS</span>
+<hr width="370px" size="2" style="text-align:left;margin-left:0" noshade>
+<table width="370px"><tr><td>
+<div style="width:42%; float:left;">
+<table class="inner" >
+<tr><th scope="row" class="item_label">TSS ID:</th><td>[[Tss id::{{{tss_id}}}]]</td></tr>
+<tr><th scope="row" class="item_label">Species:</th><td>{{{species}}}</td></tr>
+<tr><th scope="row" class="item_label">Chr:</th><td>{{{chr}}}</td></tr>
+<tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification}}}</td></tr>
+</table>
+</div>
+<div style="width:42%; float:right;margin-left:40px">
+<table class="inner" >
+<tr><th scope="row" class="item_label">Start:</th><td>{{{start}}}</td></tr>
+<tr><th scope="row" class="item_label">End:</th><td>{{{end}}}</td></tr>
+<tr><th scope="row" class="item_label">Strand:</th><td>{{{strand}}}</td></tr>
+<tr><th scope="row" class="item_label">TSS Score:</th><td>{{{strand}}}</td></tr>
+</table>
+</div></td></tr>
+</table>
+<br/>
+<br/>
+<span class="section_head">Gene and protein annotation</span>
+<hr width="270px" size="2" style="text-align:left;margin-left:0" noshade>
+<table border="0" ><tr><td>
+<div style="width:42%; float:left;">
+<table class="inner" >
+<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
+<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
+<tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id}}}</td></tr>
+<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id}}}</td></tr>
+<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id}}}</td></tr>
+</table></div>
+<div style="width:42%; float:right;">
+<table class="inner" >
+<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name}}}</td></tr>
+<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr>
+<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms}}}</td></tr>
+<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source}}}</td></tr>
+</table>
+</div></td></tr>
+</table>
+<br/>
+<br/>
+<span class="section_head">Transcript annotation</span>
+<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
+<table class="inner" border="0" >
+<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
+<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
+<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans}}}</td></tr>
+<tr><th scope="row" align="left">All_trans:</th><td>:{{{all_trans}}}</td></tr>
+</table>
+<br/>
+<br/>
+<span class="section_head">TATA-Box annotation</span>
+<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
+<table class="inner" style="width: 600px;table-layout:fixed;">
+<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description}}}</td></tr>
+<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type}}}</td></tr>
+<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent}}}</td></tr>
+<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent}}}</td></tr>
+<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box}}}</td></tr>
+</table>
+[[Test area::{{{param1}}}e{{{param2}}} m²|{{{param1}}} × 10<sup>{{{param2}}}</sup> m²]]