TSS: Rfmm 82160.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |all_trans=AK015021:-7 LF197258:-16 MA432835:-16 LF303050:74 MA538627:74 | ||
|annotation=exon (NR_126329.1, exon 10 of 10) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EM10D2154748,EM10E0888922) | |ccre_description=pELS (EM10D2154748,EM10E0888922) | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.071429 | |cpg_percent=0.071429 | ||
|detailed_annotation= | |detailed_annotation=-exon (NR_126329.1, exon 10 of 10) | ||
|distance=-7 | |distance=-7 | ||
|distance_to_tss= | |distance_to_tss=-1961 | ||
|end=109978345 | |end=109978345 | ||
|entrez_id= | |entrez_id=4922502B01Rik | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.733333 | |gc_percent=0.733333 | ||
| Line 19: | Line 20: | ||
|gene_symbol=4922502B01Rik | |gene_symbol=4922502B01Rik | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1918204 | |hgnc_mgi_id=MGI:1918204 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_151498.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=LF197258:-16 MA432835:-16 LF303050:74 MA538627:74 | ||
|nearest_unigene=NR_151498 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=109978331 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:32, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS (EM10D2154748,EM10E0888922) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1961 |
|---|---|
| Nearest PromoterID: | NR_151498.1 |
| Entrez ID: | 4922502B01Rik |
| Nearest Unigene: | NR_151498 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | RIKEN cDNA 4922502B01 gene |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.071429 |
| GC%: | 0.733333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.