TSS: Rfmm 90363.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000055433.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EM10D2966016,EM10E1225286) |chr=chr9 |cpg_percent=0.043478 |...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=LF202929:191 MA438506:191 ENSMUST00000055433.5:202 BC094332:227 ENSMUST00000064445.2:281 AK083698:281 | ||
|annotation=promoter-TSS (NM_145134.3) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2966016,EM10E1225286) | |ccre_description=PLS,CTCF-bound (EM10D2966016,EM10E1225286) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.043478 | |cpg_percent=0.043478 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_145134.3) | ||
|distance=191 | |distance=191 | ||
|distance_to_tss=- | |distance_to_tss=-701 | ||
|end=96901121 | |end=96901121 | ||
|entrez_id= | |entrez_id=Spsb4 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_145134.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000055433.5:202 BC094332:227 ENSMUST00000064445.2:281 AK083698:281 | ||
|nearest_unigene=NM_145134 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=96901098 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 08:49, 20 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2966016,EM10E1225286) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -701 |
|---|---|
| Nearest PromoterID: | NM_145134.3 |
| Entrez ID: | Spsb4 |
| Nearest Unigene: | NM_145134 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.043478 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |