TSS: Rfmm 92203.1: Difference between revisions
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000217583.2, intron 1 of 14) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EM10D2972460,EM10E1228074) |chr=chr9 |cpg_percen...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans=LF309827:174 MA545404:174 BC028875:-320 AK167271:-330 AK048460:-330 M57734:-359 AK042069:-369 ENSMUST00000217583.2:-370 AK076517:-370 AK171760:-370 AK034966:-370 ENSMUST00000111820.4:-373 AK046107:-373 AK034049:-379 NM_001200002.1:-383 AK153218:-383 AK166473:-386 NM_009752.2:-400 NR_108102.1:-400 NR_108101.1:-400 AK171593:-400 LF197847:-401 MA433424:-401 ENSMUST00000063042.11:-402 | ||
|annotation=intron (NR_108102.1, intron 1 of 14) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EM10D2972460,EM10E1228074) | |ccre_description=pELS,CTCF-bound (EM10D2972460,EM10E1228074) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.176471 | |cpg_percent=0.176471 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001200002.1, intron 1 of 1) | ||
|distance=174 | |distance=174 | ||
|distance_to_tss= | |distance_to_tss=391 | ||
|end=114230563 | |end=114230563 | ||
|entrez_id= | |entrez_id=Tmppe | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.777778 | |gc_percent=0.777778 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001200002.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=BC028875:-320 AK167271:-330 AK048460:-330 M57734:-359 AK042069:-369 ENSMUST00000217583.2:-370 AK076517:-370 AK171760:-370 AK034966:-370 ENSMUST00000111820.4:-373 AK046107:-373 AK034049:-379 NM_001200002.1:-383 AK153218:-383 AK166473:-386 NM_009752.2:-400 NR_108102.1:-400 NR_108101.1:-400 AK171593:-400 LF197847:-401 MA433424:-401 ENSMUST00000063042.11:-402 | ||
|nearest_unigene=NM_001200002 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=114230546 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 09:21, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D2972460,EM10E1228074) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 391 |
|---|---|
| Nearest PromoterID: | NM_001200002.1 |
| Entrez ID: | Tmppe |
| Nearest Unigene: | NM_001200002 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.176471 |
| GC%: | 0.777778 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "BC028875:-320 AK167271:-330 AK048460:-330 M57734:-359 AK042069:-369 ENSMUST00000217583.2:-370 AK076517:-370 AK171760:-370 AK034966:-370 ENSMUST00000111820.4:-373 AK046107:-373 AK034049:-379 NM_001200002.1:-383 AK153218:-383 AK166473:-386 NM_009752.2:-400 NR_108102.1:-400 NR_108101.1:-400 AK171593:-400 LF197847:-401 MA433424:-401 ENSMUST00000063042.11:-402" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.