TSS: Rfmm 92740.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NR_168944.1:0 ENSMUST00000217491.2:-53 AK042408:-53 LF310144:-57 MA545721:-57 LF310143:-196 MA545720:-196 | ||
|annotation=promoter-TSS (NM_001357837.1) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EM10D2975866,EM10E1229607) | |ccre_description=PLS,CTCF-bound (EM10D2975866,EM10E1229607) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.157895 | |cpg_percent=0.157895 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001357837.1) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-5 | ||
|end=121686818 | |end=121686818 | ||
|entrez_id= | |entrez_id=Gm47112 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_168944.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=ENSMUST00000217491.2:-53 AK042408:-53 LF310144:-57 MA545721:-57 LF310143:-196 MA545720:-196 | ||
|nearest_unigene=NR_168944 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=121686799 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 09:30, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2975866,EM10E1229607) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NR_168944.1 |
| Entrez ID: | Gm47112 |
| Nearest Unigene: | NR_168944 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.157895 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |