TSS: Rfmm 97458.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENSMUST00000020549.4:142 NM_001302485.1:142 NM_008504.3:142 NR_126325.1:142 AB015728:142 BC139217:273 BC139218:273 BC145578:273 BC145579:273 | ||
|annotation=promoter-TSS (NM_001302485.1) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001302485.1) | ||
|distance=142 | |distance=142 | ||
|distance_to_tss=-142 | |distance_to_tss=-142 | ||
|end=79524712 | |end=79524712 | ||
|entrez_id= | |entrez_id=Gzmm | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
| Line 19: | Line 20: | ||
|gene_symbol=Gzmm | |gene_symbol=Gzmm | ||
|gene_synonyms=Lmet1 | |gene_synonyms=Lmet1 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:99549 | |hgnc_mgi_id=MGI:99549 | ||
|methods=TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_126325.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts=BC139217:273 BC139218:273 BC145578:273 BC145579:273 | ||
|nearest_unigene=XM_006513277 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=mouse | |species=mouse | ||
|start= | |start=79524712 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 10:47, 20 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | -142 |
|---|---|
| Nearest PromoterID: | NR_126325.1 |
| Entrez ID: | Gzmm |
| Nearest Unigene: | XM_006513277 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | granzyme M (lymphocyte met-ase 1) |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.