TSS: Rfmm 99322.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EM10D1181840,EM10E0486231) |chr=chr10 |cpg_percent=0.000000 |detailed_annotation=Intergenic |d...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 7: | Line 8: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-7728 | ||
|end=96102502 | |end=96102502 | ||
|entrez_id= | |entrez_id=Gm40747 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.555556 | |gc_percent=0.555556 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XR_001779846.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts= | ||
|nearest_unigene=XR_001779846 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=96102494 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:19, 20 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS (EM10D1181840,EM10E0486231) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -7728 |
|---|---|
| Nearest PromoterID: | XR_001779846.2 |
| Entrez ID: | Gm40747 |
| Nearest Unigene: | XR_001779846 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.555556 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |