TSS: Rfmm 99878.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans= | ||
|annotation=intron (XR_001779558.2, intron 1 of 12) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EM10D2341202,EM10E0964335) | |ccre_description=pELS,CTCF-bound (EM10D2341202,EM10E0964335) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001358932.1, intron 1 of 12) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=737 | ||
|end=111309827 | |end=111309827 | ||
|entrez_id= | |entrez_id=Nap1l1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.250000 | |gc_percent=0.250000 | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_015781.5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_transcripts= | ||
|nearest_unigene=XM_036155892 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start= | |start=111309824 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:28, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D2341202,EM10E0964335) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 737 |
|---|---|
| Nearest PromoterID: | NM_015781.5 |
| Entrez ID: | Nap1l1 |
| Nearest Unigene: | XM_036155892 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.250000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |