TSS: Rfhg 100670.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000623936.2:38 | |||
|annotation=intron (NM_001321710, intron 21 of 32) | |annotation=intron (NM_001321710, intron 21 of 32) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=pleiotrophin | |gene_description=pleiotrophin | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}oligo_capping{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000105894 | |nearest_ensembl=ENSG00000105894 | ||
|nearest_promoter_id=NM_002825 | |nearest_promoter_id=NM_002825 | ||
|nearest_refseq=NM_002825 | |nearest_refseq=NM_002825 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.371249 | |nearest_unigene=Hs.371249 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=137513813 | |start=137513813 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000623936.2 | |transcript_name=ENST00000623936.2 | ||
|tss_cluster_detected=8 | |||
|tss_id=rfhg_100670.1 | |tss_id=rfhg_100670.1 | ||
|tss_id_v3=hg_81392.1 | |tss_id_v3=hg_81392.1 | ||
Latest revision as of 11:19, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914|PRJNA401781|PRJNA615891|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|oligo_capping|SLIC_CAGE|RAMPAGE|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 8 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -170084 |
|---|---|
| Nearest PromoterID: | NM_002825 |
| Entrez ID: | 5764 |
| Nearest Unigene: | Hs.371249 |
| Nearest Refseq: | NM_002825 |
| Nearest Ensembl: | ENSG00000105894 |
| Gene Name: | |
| Gene Alias: | HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |