TSS: Rfhg 100846.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF361823:-175 MA597400:-175 LF361824:-404 MA597401:-404 LF361825:-476 MA597402:-476 | |||
|annotation=exon (NM_016019, exon 1 of 10) | |annotation=exon (NM_016019, exon 1 of 10) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=LUC7 like 2, pre-mRNA splicing factor | |gene_description=LUC7 like 2, pre-mRNA splicing factor | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000146963 | |nearest_ensembl=ENSG00000146963 | ||
|nearest_promoter_id=NM_016019 | |nearest_promoter_id=NM_016019 | ||
|nearest_refseq=NM_016019 | |nearest_refseq=NM_016019 | ||
|nearest_transcripts=LF361824:-404 MA597401:-404 LF361825:-476 MA597402:-476 | |||
|nearest_unigene=Hs.731488 | |nearest_unigene=Hs.731488 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=139360263 | |start=139360263 | ||
Latest revision as of 11:23, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4038402,EH38E2595563) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 392 |
|---|---|
| Nearest PromoterID: | NM_016019 |
| Entrez ID: | 51631 |
| Nearest Unigene: | Hs.731488 |
| Nearest Refseq: | NM_016019 |
| Nearest Ensembl: | ENSG00000146963 |
| Gene Name: | |
| Gene Alias: | CGI-59|CGI-74|LUC7B2 |
| Gene Type: | protein-coding |
| CpG%: | 0.108696 |
| GC%: | 0.680851 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |