TSS: Rfhg 101003.1: Difference between revisions

Latest revision as of 11:25, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_101003.1
Species:	human
Chr:	chr7

Start:	140641452
End:	140641465
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4039651,EH38E2596532)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001318053.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000491728.5:-20 BC115004:-21 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_001318053
Entrez ID:	27147
Nearest Unigene:	Hs.6385
Nearest Refseq:	NM_015689
Nearest Ensembl:	ENSG00000146966
Gene Name:
Gene Alias:	FAM31D\|KIAA1277
Gene Type:	protein-coding
CpG%:	0.076923
GC%:	0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001318053.2:0 ENST00000491728.5:-20 BC115004:-21
 |annotation=promoter-TSS (NM_001318053)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=DENN domain containing 2A
 |gene_id=
-|gene_name=DENND2A
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000146966
 |nearest_promoter_id=NM_001318053
 |nearest_refseq=NM_015689
+|nearest_transcripts=ENST00000491728.5:-20 BC115004:-21
 |nearest_unigene=Hs.6385
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=140641452