TSS: Rfhg 101425.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000390412.1:0 D32026:0 D32032:0 D32037:0 L77705:0 AF088716:0 AF088725:0 MG790887:0 D50750:0 AF088724:0 AB076766:0 AB076779:0 D32031:0 AF088723:0 AF088782:0 AF088785:0 AF088799:0 AB076750:0 AB076753:0 AB044104:0 AB076758:0 D32034:0 U07135:0 S69569:0 AF088323:0 AF088524:0 D32036:0 U07138:0 AF088709:0 AF088781:0 AF088790:0 U07137:0 AF088743:0 AF088789:0 AB076763:0 AB076769:0 AF088721:0 AF088728:0 KM004276:0 D31827:0 AF088731:0 D50744:167 AB044117:168 AB076752:168 AF088726:170 AF088730:171 AB044123:173 AB076767:173 AB076782:173 L77728:173 AF088705:173 D50762:173 AB076785:174 D50755:174 KM004279:178 L77713:179 AF088749:179 M13867:-237 LT626065:288 X01410:448 D50769:456 JQ778264:456 AB076761:457 AB076794:457 AF088703:457 AF045802:457 AJ305362:457 AF179357:458 D32038:458 AF088702:458 D32019:460 D50743:460 AF088767:461 AF045807:461 AJ305360:461 JQ778260:461 AB076773:462 AF045808:462 AJ305361:462 Z77836:462 AF045804:465 AJ305364:465 M12424:469 AF327021:471
|annotation=intron (NM_001130026, intron 10 of 10)
|annotation=intron (NM_001130026, intron 10 of 10)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=serine protease 2
|gene_description=serine protease 2
|gene_id=28566
|gene_id=28566
|gene_name=PRSS2
|gene_name=T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
|gene_source=HGNC:12168 HGNC:12198
|gene_source=HGNC:12168 HGNC:12198
|gene_symbol=TRBJ2-1 TRBV21-1
|gene_symbol=TRBJ2-1 TRBV21-1
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:12168 HGNC:12198
|hgnc_mgi_id=HGNC:12168 HGNC:12198
|methods=CAGE
|nearest_ensembl=ENSG00000275896
|nearest_ensembl=ENSG00000275896
|nearest_promoter_id=NM_002770
|nearest_promoter_id=NM_002770
|nearest_refseq=NM_002770
|nearest_refseq=NM_002770
|nearest_transcripts=D50744:167 AB044117:168 AB076752:168 AF088726:170 AF088730:171 AB044123:173 AB076767:173 AB076782:173 L77728:173 AF088705:173 D50762:173 AB076785:174 D50755:174 KM004279:178 L77713:179 AF088749:179 M13867:-237 LT626065:288 X01410:448 D50769:456 JQ778264:456 AB076761:457 AB076794:457 AF088703:457 AF045802:457 AJ305362:457 AF179357:458 D32038:458 AF088702:458 D32019:460 D50743:460 AF088767:461 AF045807:461 AJ305360:461 JQ778260:461 AB076773:462 AF045808:462 AJ305361:462 Z77836:462 AF045804:465 AJ305364:465 M12424:469 AF327021:471
|nearest_unigene=Hs.449281
|nearest_unigene=Hs.449281
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=142796333
|start=142796333

Latest revision as of 11:31, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_101425.1
Species:human
Chr:chr7
Start:142796333
End:142796391
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4041351,EH38E2597732)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390412.1:0
AF088323:0
GeneID:28566
HGNC/MGI_ID:HGNC:12168 HGNC:12198
UniProt_ID:A0A0A0MTA7
Nearer transcript ids and distances:
  • D50744:167
  • AB044117:168
  • AB076752:168
  • AF088726:170
  • AF088730:171
  • AB044123:173
  • AB076767:173
  • AB076782:173
  • L77728:173
  • AF088705:173
  • D50762:173
  • AB076785:174
  • D50755:174
  • KM004279:178
  • L77713:179
  • AF088749:179
  • M13867:-237
  • LT626065:288
  • X01410:448
  • D50769:456
  • JQ778264:456
  • AB076761:457
  • AB076794:457
  • AF088703:457
  • AF045802:457
  • AJ305362:457
  • AF179357:458
  • D32038:458
  • AF088702:458
  • D32019:460
  • D50743:460
  • AF088767:461
  • AF045807:461
  • AJ305360:461
  • JQ778260:461
  • AB076773:462
  • AF045808:462
  • AJ305361:462
  • Z77836:462
  • AF045804:465
  • AJ305364:465
  • M12424:469
  • AF327021:471
view more...
Gene_name:T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
Gene_symbol:TRBJ2-1 TRBV21-1
Gene_synonyms:TCRBJ2S1 TCRBV10S1P TCRBV21S1 TRBJ21 TRBV211
Gene_source:HGNC:12168 HGNC:12198



TATA-Box annotation

Distance to TSS:25392
Nearest PromoterID:NM_002770
Entrez ID:5645
Nearest Unigene:Hs.449281
Nearest Refseq:NM_002770
Nearest Ensembl:ENSG00000275896
Gene Name:T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
Gene Alias:TRY2|TRY8|TRYP2
Gene Type:protein-coding
CpG%:0.017241
GC%:0.576271
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "D50744:167 AB044117:168 AB076752:168 AF088726:170 AF088730:171 AB044123:173 AB076767:173 AB076782:173 L77728:173 AF088705:173 D50762:173 AB076785:174 D50755:174 KM004279:178 L77713:179 AF088749:179 M13867:-237 LT626065:288 X01410:448 D50769:456 JQ778264:456 AB076761:457 AB076794:457 AF088703:457 AF045802:457 AJ305362:457 AF179357:458 D32038:458 AF088702:458 D32019:460 D50743:460 AF088767:461 AF045807:461 AJ305360:461 JQ778260:461 AB076773:462 AF045808:462 AJ305361:462 Z77836:462 AF045804:465 AJ305364:465 M12424:469 AF327021:471" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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