TSS: Rfhg 101495.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB977949:0 AB977636:0 AB978162:0 AB305833:0 ENST00000417977.2:6 AB305894:6 AB305920:7 AB305842:-15 AB305941:16 AB977529:23 AB977740:23 AB977638:23 AB305947:29 AB360843:39 AB305992:49 AB306147:-56 AB305801:-58 AB977671:-58 D13086:115 AB305914:116 L06893:118 AB305997:122 AB306228:128 AB305955:136
|annotation=intron (NM_001130026, intron 10 of 10)
|annotation=intron (NM_001130026, intron 10 of 10)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=EPH receptor B6
|gene_description=EPH receptor B6
|gene_id=
|gene_id=
|gene_name=EPHB6
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000106123
|nearest_ensembl=ENSG00000106123
|nearest_promoter_id=NM_001280794
|nearest_promoter_id=NM_001280794
|nearest_refseq=NM_004445
|nearest_refseq=NM_004445
|nearest_transcripts=ENST00000417977.2:6 AB305894:6 AB305920:7 AB305842:-15 AB305941:16 AB977529:23 AB977740:23 AB977638:23 AB305947:29 AB360843:39 AB305992:49 AB306147:-56 AB305801:-58 AB977671:-58 D13086:115 AB305914:116 L06893:118 AB305997:122 AB306228:128 AB305955:136
|nearest_unigene=Hs.380089
|nearest_unigene=Hs.380089
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=142813405
|start=142813405

Latest revision as of 11:32, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_101495.1
Species:human
Chr:chr7
Start:142813405
End:142813436
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D4041393,EH38E2597774)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB977949:0
AB977636:0
AB978162:0
AB305833:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000417977.2:6
  • AB305894:6
  • AB305920:7
  • AB305842:-15
  • AB305941:16
  • AB977529:23
  • AB977740:23
  • AB977638:23
  • AB305947:29
  • AB360843:39
  • AB305992:49
  • AB306147:-56
  • AB305801:-58
  • AB977671:-58
  • D13086:115
  • AB305914:116
  • L06893:118
  • AB305997:122
  • AB306228:128
  • AB305955:136
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-41594
Nearest PromoterID:NM_001280794
Entrez ID:2051
Nearest Unigene:Hs.380089
Nearest Refseq:NM_004445
Nearest Ensembl:ENSG00000106123
Gene Name:
Gene Alias:HEP
Gene Type:protein-coding
CpG%:0.000000
GC%:0.593750
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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