TSS: Rfhg 101809.1: Difference between revisions

Latest revision as of 11:38, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_101809.1
TSS ID(Version3):	hg_81887.1 hg_81886.1
Species:	human
Chr:	chr7

Start:	149195466
End:	149195512
Strand:	+

Source datasets

Protocol

CAGE|NETCAGE|RAMPAGE|SLIC_CAGE|ReCappable-seq

TSS cluster detected^*

9

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4045172,EH38E2599921)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF384106:0 MA619683:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	D30612:-4 ENST00000610704.5:34 NM_003575.4:34 NM_001303481.3:34 ENST00000479907.1:38 AK299280:38 BC073805:57 AK316282:63 AB587508:78 BC055287:160 BC041704:223 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-57
Nearest PromoterID:	NM_001303481
Entrez ID:	8427
Nearest Unigene:	Hs.729056
Nearest Refseq:	NM_003575
Nearest Ensembl:	ENSG00000170265
Gene Name:
Gene Alias:	HUB1
Gene Type:	protein-coding
CpG%:	0.065217
GC%:	0.617021
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF384106:0 MA619683:0 D30612:-4 ENST00000610704.5:34 NM_003575.4:34 NM_001303481.3:34 ENST00000479907.1:38 AK299280:38 BC073805:57 AK316282:63 AB587508:78 BC055287:160 BC041704:223
 |annotation=promoter-TSS (NM_003575)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=zinc finger protein 282
 |gene_id=
-|gene_name=ZNF282
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}NETCAGE{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000170265
 |nearest_promoter_id=NM_001303481
 |nearest_refseq=NM_003575
+|nearest_transcripts=D30612:-4 ENST00000610704.5:34 NM_003575.4:34 NM_001303481.3:34 ENST00000479907.1:38 AK299280:38 BC073805:57 AK316282:63 AB587508:78 BC055287:160 BC041704:223
 |nearest_unigene=Hs.729056
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673
 |species=human
 |start=149195466
@@ Line 32: / Line 36: @@
 |tata_box=
 |transcript_name=LF384106 MA619683
+|tss_cluster_detected=9
 |tss_id=rfhg_101809.1
 |tss_id_v3=hg_81887.1;hg_81886.1